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Software

Epistorm Forecasting analysis platform
One-stop dashboard for the visualization and analysis of the model contributed by Epistorm to the CDC Flusight forecasting program.

RtEval
R functions and vignettes to generate datasets and compare the most commonly used tools for reproductive number estimation.

Reproductive number estimation R packages
Package to estimate the reproductive number at a spatially granular level with mobility data and also separately to incorporate reporting delays.

SummRt
R package and software to compare estimators of the time varying reproductive number; built in collaboration with the EpiForeSite center.