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Publications

Emerg Infect Dis. 2024;30(10):2042-2046.
Valentina Marziano, Giorgio Guzzetta, Ira Longini, and Stefano Merler
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Journal of Pest Science (2024)
Allisandra G. Kummer, André B. B. Wilke, Paulo C. Ventura, Chalmers Vasquez, Johana Medina, Isik Unlu, Yaziri Gonzalez, Adquate Mhlanga, Giovanni Benelli, Keisuke Ejima, John-Paul Mutebi & Marco Ajelli
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ICLR 2024 Conference Paper
Bo Zhao, Robert Gower, Robin Walters, Rose Yu
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Nature Communications volume 15, Article number: 1214 (2024)
Kayoko Shioda, Alexander Breskin, Pravara Harati, Allison T. Chamberlain, Toshiaki Komura, Benjamin A. Lopman & Elizabeth T. Rogawski McQuade
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Media Coverage


Software

Epistorm Forecasting analysis platform
One-stop dashboard for the visualization and analysis of the model contributed by Epistorm to the CDC Flusight forecasting program.

RtEval
R functions and vignettes to generate datasets and compare the most commonly used tools for reproductive number estimation.

Reproductive number estimation R packages
Package to estimate the reproductive number at a spatially granular level with mobility data and also separately to incorporate reporting delays.

SummRt
R package and software to compare estimators of the time varying reproductive number; built in collaboration with the EpiForeSite center.